Detailed information of SNP:
|
SNP ID:
sf0142244109(Gbrowse)
Chromosome: chr01 Position: 42244109 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 66.53% | 33.47% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 27.36% | 72.64% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 12.84% | 87.16% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142244109 | C->T | LOC_Os01g72820(LOC_Os01g72820.6) | UTR_3_PRIME |
| sf0142244109 | C->T | LOC_Os01g72820(LOC_Os01g72820.3) | UTR_3_PRIME |
| sf0142244109 | C->T | LOC_Os01g72820(LOC_Os01g72820.4) | UTR_3_PRIME |
| sf0142244109 | C->T | LOC_Os01g72820(LOC_Os01g72820.5) | UTR_3_PRIME |
| sf0142244109 | C->T | LOC_Os01g72820(LOC_Os01g72820.2) | UTR_3_PRIME |
| sf0142244109 | C->T | LOC_Os01g72820(LOC_Os01g72820.1) | UTR_3_PRIME |