Detailed information of SNP:
|
SNP ID:
sf0142246259(Gbrowse)
Chromosome: chr01 Position: 42246259 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1302 | 90.48% | 9.52% |
| All Indica | 712 | 82.72% | 17.28% |
| All Japonica | 477 | 99.79% | 0.21% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 320 | 83.12% | 16.87% |
| Indica II | 197 | 90.86% | 9.14% |
| Indica Intermediate | 195 | 73.85% | 26.15% |
| Temperate Japonica | 328 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 57 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142246259 | C->T | INTERGENIC | None |