Detailed information of SNP:



SNP ID: sf0142256355(Gbrowse)

Chromosome: chr01

Position: 42256355
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1419 77.73% 22.27%
All Indica799 98.75% 1.25%
All Japonica497 40.64% 59.36%
Aus67 88.06% 11.94%
Indica I375 98.67% 1.33%
Indica II213 98.59% 1.41%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 15.22% 84.78%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 83.82% 16.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0142256355 G->A INTERGENIC None