Detailed information of SNP:
SNP ID:
sf0142256355(Gbrowse)
Chromosome: chr01 Position: 42256355 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1419 | 77.73% | 22.27% |
All Indica | 799 | 98.75% | 1.25% |
All Japonica | 497 | 40.64% | 59.36% |
Aus | 67 | 88.06% | 11.94% |
Indica I | 375 | 98.67% | 1.33% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 15.22% | 84.78% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 83.82% | 16.18% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0142256355 | G->A | INTERGENIC | None |