Detailed information of SNP:
|
SNP ID:
sf0142320981(Gbrowse)
Chromosome: chr01 Position: 42320981 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 72.83% | 27.17% |
| All Indica | 788 | 53.55% | 46.45% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 370 | 65.68% | 34.32% |
| Indica II | 210 | 28.57% | 71.43% |
| Indica Intermediate | 208 | 57.21% | 42.79% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142320981 | G->A | INTERGENIC | None |