Detailed information of SNP:
|
SNP ID:
sf0142335863(Gbrowse)
Chromosome: chr01 Position: 42335863 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.16% | 11.84% |
| All Indica | 799 | 81.10% | 18.90% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142335863 | C->T | LOC_Os01g72990(LOC_Os01g72990.1) | INTRON |
| sf0142335863 | C->T | LOC_Os01g72990(LOC_Os01g72990.2) | INTRON |