Detailed information of SNP:
|
SNP ID:
sf0142338364(Gbrowse)
Chromosome: chr01 Position: 42338364 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 89.15% | 10.85% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142338364 | C->T | LOC_Os01g72990(LOC_Os01g72990.1) | INTRON |
| sf0142338364 | C->T | LOC_Os01g72990(LOC_Os01g72990.2) | INTRON |