Detailed information of SNP:
|
SNP ID:
sf0142346897(Gbrowse)
Chromosome: chr01 Position: 42346897 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 86.82% | 13.18% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 35.21% | 64.79% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142346897 | A->C | LOC_Os01g72990(LOC_Os01g72990.1) | UTR_5_PRIME |
| sf0142346897 | A->C | LOC_Os01g72990(LOC_Os01g72990.2) | UTR_5_PRIME |