Detailed information of SNP:
|
SNP ID:
sf0142372087(Gbrowse)
Chromosome: chr01 Position: 42372087 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1202 | 70.05% | 29.95% |
| All Indica | 599 | 74.62% | 25.38% |
| All Japonica | 487 | 61.40% | 38.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 261 | 97.70% | 2.30% |
| Indica II | 199 | 32.66% | 67.34% |
| Indica Intermediate | 139 | 91.37% | 8.63% |
| Temperate Japonica | 333 | 72.37% | 27.63% |
| Tropical Japonica | 88 | 29.55% | 70.45% |
| Japonica Intermediate | 66 | 48.48% | 51.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142372087 | T->C | INTERGENIC | None |