Detailed information of SNP:
|
SNP ID:
sf0142372209(Gbrowse)
Chromosome: chr01 Position: 42372209 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 57.58% | 42.42% |
| All Indica | 799 | 53.32% | 46.68% |
| All Japonica | 497 | 59.76% | 40.24% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 66.40% | 33.60% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 71.64% | 28.36% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142372209 | T->A | INTERGENIC | None |