Detailed information of SNP:
|
SNP ID:
sf0142372638(Gbrowse)
Chromosome: chr01 Position: 42372638 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 78.04% | 21.96% |
| All Indica | 797 | 81.93% | 18.07% |
| All Japonica | 496 | 68.75% | 31.25% |
| Aus | 60 | 91.67% | 8.33% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 37.26% | 62.74% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142372638 | C->A | INTERGENIC | None |