Detailed information of SNP:
|
SNP ID:
sf0142403888(Gbrowse)
Chromosome: chr01 Position: 42403888 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.92% | 16.08% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 62.17% | 37.83% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 47.46% | 52.54% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142403888 | T->C | LOC_Os01g73100(LOC_Os01g73100.1) | INTRON |