Detailed information of SNP:
|
SNP ID:
sf0142426716(Gbrowse)
Chromosome: chr01 Position: 42426716 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1307 | 83.17% | 16.83% |
| All Indica | 735 | 89.66% | 10.34% |
| All Japonica | 460 | 69.57% | 30.43% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 340 | 80.88% | 19.12% |
| Indica II | 197 | 98.48% | 1.52% |
| Indica Intermediate | 198 | 95.96% | 4.04% |
| Temperate Japonica | 304 | 69.41% | 30.59% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 64 | 59.38% | 40.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142426716 | C->T | INTERGENIC | None |