Detailed information of SNP:
|
SNP ID:
sf0142430546(Gbrowse)
Chromosome: chr01 Position: 42430546 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1198 | 94.57% | 5.43% |
| All Indica | 675 | 99.11% | 0.89% |
| All Japonica | 410 | 85.85% | 14.15% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 308 | 99.03% | 0.97% |
| Indica II | 191 | 98.95% | 1.05% |
| Indica Intermediate | 176 | 99.43% | 0.57% |
| Temperate Japonica | 261 | 78.93% | 21.07% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142430546 | C->T | LOC_Os01g73170(LOC_Os01g73170.1) | INTRON |