Detailed information of SNP:
|
SNP ID:
sf0142433369(Gbrowse)
Chromosome: chr01 Position: 42433369 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 74.56% | 25.44% |
| All Indica | 799 | 82.10% | 17.90% |
| All Japonica | 497 | 60.56% | 39.44% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142433369 | A->G | INTERGENIC | None |