Detailed information of SNP:
|
SNP ID:
sf0142462808(Gbrowse)
Chromosome: chr01 Position: 42462808 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 56.08% | 43.92% |
| All Indica | 795 | 71.45% | 28.55% |
| All Japonica | 497 | 26.96% | 73.04% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 212 | 36.79% | 63.21% |
| Indica Intermediate | 209 | 74.64% | 25.36% |
| Temperate Japonica | 335 | 32.54% | 67.46% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142462808 | G->A | INTERGENIC | None |