Detailed information of SNP:
|
SNP ID:
sf0142472157(Gbrowse)
Chromosome: chr01 Position: 42472157 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 55.06% | 44.94% |
| All Indica | 787 | 44.09% | 55.91% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 65 | 24.62% | 75.38% |
| Indica I | 366 | 31.15% | 68.85% |
| Indica II | 213 | 70.89% | 29.11% |
| Indica Intermediate | 208 | 39.42% | 60.58% |
| Temperate Japonica | 335 | 71.04% | 28.96% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142472157 | G->A | LOC_Os01g73280(LOC_Os01g73280.1) | Non-Synonymous SNP |