Detailed information of SNP:
|
SNP ID:
sf0142474038(Gbrowse)
Chromosome: chr01 Position: 42474038 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1295 | 88.49% | 11.51% |
| All Indica | 695 | 78.99% | 21.01% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 315 | 74.29% | 25.71% |
| Indica II | 198 | 92.42% | 7.58% |
| Indica Intermediate | 182 | 72.53% | 27.47% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 33 | 93.94% | 6.06% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142474038 | T->C | LOC_Os01g73290(LOC_Os01g73290.1) | INTRON |