Detailed information of SNP:
|
SNP ID:
sf0142477633(Gbrowse)
Chromosome: chr01 Position: 42477633 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 74.10% | 25.90% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 476 | 26.89% | 73.11% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 32.93% | 67.07% |
| Tropical Japonica | 81 | 9.88% | 90.12% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142477633 | A->C | INTERGENIC | None |