Detailed information of SNP:
|
SNP ID:
sf0142480983(Gbrowse)
Chromosome: chr01 Position: 42480983 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 80.54% | 19.46% |
| All Indica | 799 | 70.34% | 29.66% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 35.21% | 64.79% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142480983 | A->T | LOC_Os01g73300(LOC_Os01g73300.1) | INTRON |