Detailed information of SNP:
|
SNP ID:
sf0142490901(Gbrowse)
Chromosome: chr01 Position: 42490901 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 83.69% | 16.31% |
| All Indica | 790 | 73.92% | 26.08% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 374 | 89.84% | 10.16% |
| Indica II | 209 | 43.06% | 56.94% |
| Indica Intermediate | 207 | 76.33% | 23.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142490901 | A->G | INTERGENIC | None |