Detailed information of SNP:
|
SNP ID:
sf0142533541(Gbrowse)
Chromosome: chr01 Position: 42533541 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 76.12% | 23.88% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 485 | 32.99% | 67.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 32.24% | 67.76% |
| Tropical Japonica | 82 | 36.59% | 63.41% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142533541 | T->A | INTERGENIC | None |