Detailed information of SNP:
|
SNP ID:
sf0142572695(Gbrowse)
Chromosome: chr01 Position: 42572695 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 63.09% | 36.91% |
| All Indica | 798 | 95.36% | 4.64% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 8.06% | 91.94% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142572695 | C->T | INTERGENIC | None |