Detailed information of SNP:
|
SNP ID:
sf0142588650(Gbrowse)
Chromosome: chr01 Position: 42588650 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 85.61% | 14.39% |
| All Indica | 791 | 75.09% | 24.91% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.08% | 9.92% |
| Indica II | 212 | 41.04% | 58.96% |
| Indica Intermediate | 206 | 83.01% | 16.99% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142588650 | G->A | LOC_Os01g73500(LOC_Os01g73500.2) | INTRON |
| sf0142588650 | G->A | LOC_Os01g73500(LOC_Os01g73500.1) | INTRON |