Detailed information of SNP:
|
SNP ID:
sf0142614739(Gbrowse)
Chromosome: chr01 Position: 42614739 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 72.41% | 27.59% |
| All Indica | 797 | 69.39% | 30.61% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 212 | 30.66% | 69.34% |
| Indica Intermediate | 210 | 74.76% | 25.24% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142614739 | A->G | LOC_Os01g73550(LOC_Os01g73550.2) | Synonymous |
| sf0142614739 | A->G | LOC_Os01g73550(LOC_Os01g73550.1) | Synonymous |