Detailed information of SNP:
|
SNP ID:
sf0142629985(Gbrowse)
Chromosome: chr01 Position: 42629985 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 87.88% | 12.12% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142629985 | G->C | INTERGENIC | None |