Detailed information of SNP:
SNP ID:
sf0142631406(Gbrowse)
Chromosome: chr01 Position: 42631406 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1415 | 85.94% | 14.06% |
All Indica | 796 | 75.50% | 24.50% |
All Japonica | 497 | 99.60% | 0.40% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 78.67% | 21.33% |
Indica II | 211 | 81.52% | 18.48% |
Indica Intermediate | 210 | 63.81% | 36.19% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0142631406 | G->A | INTERGENIC | None |