Detailed information of SNP:



SNP ID: sf0142631406(Gbrowse)

Chromosome: chr01

Position: 42631406
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1415 85.94% 14.06%
All Indica796 75.50% 24.50%
All Japonica497 99.60% 0.40%
Aus67 100.00% 0.00%
Indica I375 78.67% 21.33%
Indica II211 81.52% 18.48%
Indica Intermediate210 63.81% 36.19%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0142631406 G->A INTERGENIC None