Detailed information of SNP:
|
SNP ID:
sf0142632187(Gbrowse)
Chromosome: chr01 Position: 42632187 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 71.09% | 28.91% |
| All Indica | 798 | 74.94% | 25.06% |
| All Japonica | 497 | 74.04% | 25.96% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 212 | 38.21% | 61.79% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 85.07% | 14.93% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142632187 | T->C | INTERGENIC | None |