Detailed information of SNP:
|
SNP ID:
sf0142637724(Gbrowse)
Chromosome: chr01 Position: 42637724 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 66.01% | 33.99% |
| All Indica | 798 | 42.86% | 57.14% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 41.87% | 58.13% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 210 | 22.86% | 77.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142637724 | G->A | INTERGENIC | None |