Detailed information of SNP:
|
SNP ID:
sf0142641275(Gbrowse)
Chromosome: chr01 Position: 42641275 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 83.24% | 16.76% |
| All Indica | 772 | 72.41% | 27.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 66.22% | 33.78% |
| Indica II | 199 | 91.46% | 8.54% |
| Indica Intermediate | 200 | 65.00% | 35.00% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142641275 | A->G | LOC_Os01g73604(LOC_Os01g73604.1) | INTRON |