Detailed information of SNP:
|
SNP ID:
sf0142682527(Gbrowse)
Chromosome: chr01 Position: 42682527 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1309 | 75.40% | 24.60% |
| All Indica | 692 | 54.34% | 45.66% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 316 | 25.63% | 74.37% |
| Indica II | 196 | 88.27% | 11.73% |
| Indica Intermediate | 180 | 67.78% | 32.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142682527 | C->G | INTERGENIC | None |