Detailed information of SNP:
|
SNP ID:
sf0142682945(Gbrowse)
Chromosome: chr01 Position: 42682945 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 72.62% | 27.38% |
| All Indica | 704 | 50.99% | 49.01% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 318 | 22.64% | 77.36% |
| Indica II | 200 | 83.00% | 17.00% |
| Indica Intermediate | 186 | 65.05% | 34.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 88.04% | 11.96% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142682945 | C->A | INTERGENIC | None |