Detailed information of SNP:
|
SNP ID:
sf0142685494(Gbrowse)
Chromosome: chr01 Position: 42685494 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.12% | 41.88% |
| All Indica | 797 | 28.11% | 71.89% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 10.93% | 89.07% |
| Indica II | 211 | 66.35% | 33.65% |
| Indica Intermediate | 211 | 20.38% | 79.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142685494 | G->T | LOC_Os01g73670(LOC_Os01g73670.1) | Non-Synonymous SNP |
| sf0142685494 | G->T | LOC_Os01g73670(LOC_Os01g73670.2) | Non-Synonymous SNP |
| sf0142685494 | G->T | LOC_Os01g73670(LOC_Os01g73670.3) | Non-Synonymous SNP |
| sf0142685494 | G->T | LOC_Os01g73670(LOC_Os01g73670.4) | Non-Synonymous SNP |