Detailed information of SNP:
|
SNP ID:
sf0142687884(Gbrowse)
Chromosome: chr01 Position: 42687884 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.97% | 14.03% |
| All Indica | 798 | 75.69% | 24.31% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 212 | 39.15% | 60.85% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142687884 | T->A | LOC_Os01g73670(LOC_Os01g73670.1) | UTR_3_PRIME |
| sf0142687884 | T->A | LOC_Os01g73670(LOC_Os01g73670.2) | UTR_3_PRIME |
| sf0142687884 | T->A | LOC_Os01g73670(LOC_Os01g73670.3) | UTR_3_PRIME |
| sf0142687884 | T->A | LOC_Os01g73670(LOC_Os01g73670.4) | UTR_3_PRIME |