Detailed information of SNP:
|
SNP ID:
sf0142694439(Gbrowse)
Chromosome: chr01 Position: 42694439 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 86.18% | 13.82% |
| All Indica | 798 | 76.07% | 23.93% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142694439 | A->G | LOC_Os01g73680(LOC_Os01g73680.1) | UTR_3_PRIME |
| sf0142694439 | A->G | LOC_Os01g73690(LOC_Os01g73690.1) | UTR_3_PRIME |