Detailed information of SNP:
|
SNP ID:
sf0142705154(Gbrowse)
Chromosome: chr01 Position: 42705154 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 56.91% | 43.09% |
| All Indica | 798 | 73.81% | 26.19% |
| All Japonica | 497 | 23.54% | 76.46% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 8.36% | 91.64% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142705154 | T->G | INTERGENIC | None |