Detailed information of SNP:
|
SNP ID:
sf0142741032(Gbrowse)
Chromosome: chr01 Position: 42741032 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 74.79% | 25.21% |
| All Indica | 789 | 56.40% | 43.60% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 62.43% | 37.57% |
| Indica II | 210 | 36.19% | 63.81% |
| Indica Intermediate | 209 | 66.03% | 33.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142741032 | G->A | LOC_Os01g73790(LOC_Os01g73790.1) | UTR_5_PRIME |