Detailed information of SNP:
|
SNP ID:
sf0142743822(Gbrowse)
Chromosome: chr01 Position: 42743822 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1224 | 69.77% | 30.23% |
| All Indica | 610 | 49.51% | 50.49% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 347 | 29.97% | 70.03% |
| Indica II | 88 | 84.09% | 15.91% |
| Indica Intermediate | 175 | 70.86% | 29.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142743822 | T->C | INTERGENIC | None |