Detailed information of SNP:
|
SNP ID:
sf0142763857(Gbrowse)
Chromosome: chr01 Position: 42763857 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 97.10% | 2.90% |
| All Indica | 795 | 97.48% | 2.52% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142763857 | G->A | INTERGENIC | None |