Detailed information of SNP:
|
SNP ID:
sf0142801459(Gbrowse)
Chromosome: chr01 Position: 42801459 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 84.85% | 15.15% |
| All Indica | 799 | 80.60% | 19.40% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142801459 | A->C | INTERGENIC | None |