Detailed information of SNP:
|
SNP ID:
sf0142830933(Gbrowse)
Chromosome: chr01 Position: 42830933 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 89.80% | 10.20% |
| All Indica | 767 | 85.66% | 14.34% |
| All Japonica | 492 | 95.73% | 4.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 350 | 82.57% | 17.43% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142830933 | T->C | LOC_Os01g73930(LOC_Os01g73930.1) | Non-Synonymous SNP |