Detailed information of SNP:
|
SNP ID:
sf0142902493(Gbrowse)
Chromosome: chr01 Position: 42902493 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 94.10% | 5.90% |
| All Indica | 783 | 91.44% | 8.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 55 | 74.55% | 25.45% |
| Indica I | 361 | 84.76% | 15.24% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142902493 | G->A | INTERGENIC | None |