Detailed information of SNP:
|
SNP ID:
sf0142908070(Gbrowse)
Chromosome: chr01 Position: 42908070 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.36% | 11.64% |
| All Indica | 797 | 83.69% | 16.31% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 70.86% | 29.14% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142908070 | C->T | INTERGENIC | None |