Detailed information of SNP:
|
SNP ID:
sf0142908172(Gbrowse)
Chromosome: chr01 Position: 42908172 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 69.49% | 30.51% |
| All Indica | 799 | 47.06% | 52.94% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 66.13% | 33.87% |
| Indica II | 213 | 16.43% | 83.57% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142908172 | G->A | INTERGENIC | None |