Detailed information of SNP:
|
SNP ID:
sf0142953852(Gbrowse)
Chromosome: chr01 Position: 42953852 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 64.24% | 35.76% |
| All Indica | 793 | 90.42% | 9.58% |
| All Japonica | 480 | 30.00% | 70.00% |
| Aus | 64 | 17.19% | 82.81% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 208 | 87.50% | 12.50% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 330 | 41.21% | 58.79% |
| Tropical Japonica | 83 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142953852 | T->A | LOC_Os01g74152(LOC_Os01g74152.1) | INTRON |