Detailed information of SNP:
|
SNP ID:
sf0142964086(Gbrowse)
Chromosome: chr01 Position: 42964086 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 59.41% | 40.59% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0142964086 | T->C | INTERGENIC | None |