Detailed information of SNP:
|
SNP ID:
sf0143088235(Gbrowse)
Chromosome: chr01 Position: 43088235 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 74.29% | 25.71% |
| All Indica | 788 | 62.06% | 37.94% |
| All Japonica | 496 | 96.98% | 3.02% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 368 | 54.08% | 45.92% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 208 | 64.90% | 35.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0143088235 | C->T | LOC_Os01g74390(LOC_Os01g74390.1) | Non-Synonymous SNP |