Detailed information of SNP:
|
SNP ID:
sf0143094451(Gbrowse)
Chromosome: chr01 Position: 43094451 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 57.77% | 42.23% |
| All Indica | 796 | 61.18% | 38.82% |
| All Japonica | 497 | 49.70% | 50.30% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 373 | 53.35% | 46.65% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 28.66% | 71.34% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0143094451 | T->C | INTERGENIC | None |