Detailed information of SNP:
|
SNP ID:
sf0143109664(Gbrowse)
Chromosome: chr01 Position: 43109664 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1276 | 96.08% | 3.92% |
| All Indica | 695 | 95.40% | 4.60% |
| All Japonica | 480 | 98.12% | 1.88% |
| Aus | 45 | 84.44% | 15.56% |
| Indica I | 321 | 96.26% | 3.74% |
| Indica II | 190 | 95.79% | 4.21% |
| Indica Intermediate | 184 | 93.48% | 6.52% |
| Temperate Japonica | 326 | 99.39% | 0.61% |
| Tropical Japonica | 88 | 93.18% | 6.82% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0143109664 | C->T | INTERGENIC | None |