Detailed information of SNP:
|
SNP ID:
sf0143122119(Gbrowse)
Chromosome: chr01 Position: 43122119 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.65% | 45.35% |
| All Indica | 798 | 81.83% | 18.17% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0143122119 | A->T | LOC_Os01g74460(LOC_Os01g74460.2) | INTRON |
| sf0143122119 | A->T | LOC_Os01g74460(LOC_Os01g74460.1) | INTRON |