Detailed information of SNP:
|
SNP ID:
sf0143166732(Gbrowse)
Chromosome: chr01 Position: 43166732 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.52% | 48.48% |
| All Indica | 799 | 81.10% | 18.90% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 86.93% | 13.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0143166732 | A->T | INTERGENIC | None |